Browse the log of all annotations updates based on manual curation, primarily those involving the P. aeruginosa PAO1 genome.
Strain-specific GO annotations obtained from multiple sources using various approaches (e.g. manual curation, automatic assignment by sequence similarity,etc).
Strain-specific search of pathways obtained from multiple sources using various approaches (e.g. manual curation, automatic assignment by sequence similarity,etc).
Proteins that have human homologs based on a Blastp search of the Ensembl Database(E-value=1e-4).
Proteins that have known 3D structures in the Protein Database OR have greater than 90% similarity to proteins with a known 3D structure.
Transposon insertion sites obtained from 3 different comprehensive transposon mutant libraries (two in P. aeruginosa PAO1 and one in PA14).
View a current list of strains in this database. The list can be filtered by a growing range of metadata fields including antibiotic profile and sequencing status.
View a current list of chromosomes, plasmids and contigs stored in this database. The list can be filtered by a range of parameters including species, length and assembly status.
This is a list of Pseudomonas species genome sequencing and transcriptome projects registered at NCBI. It contains Pseudomonas species projects available at NCBI that have AT LEAST one BioSample registered with them. Therefore, more projects may be available directly through NCBI's BioProject site. If you are looking for a list of strains that have their annotations and sequences stored in this database, please go to List of Strain-Specific Summaries and Analyses
List of Pseudomonas species datasets available at the NCBI Gene Expression Omnibus (GEO) database.
If you click on a project's details, it will bring you to a page containing a list of GEO Profiles where each row represents a single gene or intergenic region and displays its expression profile over the different sample conditions.