Pseudomonas aeruginosa PAO1, PA0030 (cosX)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042425 choline biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:Q500S0
 ECO:0000250
sequence similarity evidence used in manual assertion		 23763788 Reviewed by curator
Cellular Component GO:0042597 periplasmic space
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:Q500S0
 ECO:0000250
sequence similarity evidence used in manual assertion		 23763788 Reviewed by curator
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:Q500S0
 ECO:0000250
sequence similarity evidence used in manual assertion		 23763788 Reviewed by curator
Molecular Function GO:1901682 sulfur compound transmembrane transporter activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:Q500S0
 ECO:0000250
sequence similarity evidence used in manual assertion		 23763788 Reviewed by curator
Molecular Function GO:0033265 choline binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015871 choline transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR03414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.100 - - - 111 220 2.2E-92
NCBIfam TIGR03414 JCVI: choline ABC transporter substrate-binding protein IPR017783 Choline ABC transporter, substrate-binding protein 22 305 8.4E-127
Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system IPR007210 ABC-type glycine betaine transport system, substrate-binding domain 29 279 1.1E-55
Gene3D G3DSA:3.40.190.10 - - - 30 288 2.2E-92
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 22 295 2.35E-81
FunFam G3DSA:3.40.190.100:FF:000002 Choline ABC transporter substrate-binding protein - - 111 220 2.3E-59
CDD cd13640 PBP2_ChoX IPR017783 Choline ABC transporter, substrate-binding protein 30 291 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.