Pseudomonas aeruginosa PAO1, PA0048

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00530 mbf_short4 IPR001387 Cro/C1-type helix-turn-helix domain 6 61 3.4E-10
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 9 61 3.2E-11
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 75 9.2E-14
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 4 61 3.04353E-10
PANTHER PTHR46797 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 3 69 2.9E-9
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 65 1.93E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.