Pseudomonas aeruginosa PAO1, PA0077 (icmF1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Hcp secretion island I (HSI-I) type VI secretion system ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00882 Ras_like_GTPase 55 198 0.00617619
Coils Coil 21 41 -
TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF IPR017731 Type VI secretion system, IcmF 8 1099 0.0
Pfam PF06761 Intracellular multiplication and human macrophage-killing IPR009612 IcmF-related 429 722 2.5E-86
Pfam PF06744 Type VI secretion protein IcmF C-terminal IPR010623 Type VI secretion system IcmF, C-terminal 849 1049 2.3E-69
Pfam PF14331 ImcF-related N-terminal domain IPR025743 IcmF-related, N-terminal domain 120 377 1.4E-99
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 50 219 1.34E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.