Pseudomonas aeruginosa PAO1, PA0078 (tssL1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Hcp secretion island I (HSI-I) type VI secretion system ECO:0000037
not_recorded
KEGG pae03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS51123 OmpA-like domain profile. IPR006665 OmpA-like domain 327 447 47.344
MobiDBLite mobidb-lite consensus disorder prediction 1 57 -
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 339 437 1.4E-14
TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain IPR017733 Type VI secretion system peptidoglycan-associated domain 307 443 3.2E-53
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 339 443 1.83362E-34
Pfam PF09850 Type VI secretion system protein DotU IPR017732 Type IV / VI secretion system, DotU 67 269 7.0E-69
Gene3D G3DSA:1.25.40.590 IPR038522 Type IV / VI secretion system, DotU superfamily 63 221 2.9E-54
TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family IPR017732 Type IV / VI secretion system, DotU 66 275 1.2E-72
SUPERFAMILY SSF103088 IPR036737 OmpA-like domain superfamily 328 443 7.98E-29
Gene3D G3DSA:3.30.1330.60 IPR036737 OmpA-like domain superfamily 295 449 1.2E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.