Pseudomonas aeruginosa PAO1, PA0080 (tssJ1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pae03070 | Bacterial secretion system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| PseudoCAP | Hcp secretion island I (HSI-I) type VI secretion system |
ECO:0000037
not_recorded |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR03352 | JCVI: type VI secretion system lipoprotein TssJ | IPR017734 | Type VI secretion system, lipoprotein SciN | 3 | 146 | 1.7E-49 |
| Pfam | PF12790 | Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 | IPR017734 | Type VI secretion system, lipoprotein SciN | 27 | 143 | 8.0E-41 |
| PANTHER | PTHR37625 | OUTER MEMBRANE LIPOPROTEIN-RELATED | IPR017734 | Type VI secretion system, lipoprotein SciN | 2 | 148 | 8.0E-48 |
| Gene3D | G3DSA:2.60.40.4150 | Type VI secretion system, lipoprotein SciN | IPR038706 | Type VI secretion protein SciN-like superfamily | 24 | 154 | 9.0E-42 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.