Pseudomonas aeruginosa PAO1, PA0105 (coxB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13442
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13442
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004129 cytochrome-c oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0022900 electron transport chain
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50999
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.287.90 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 43 114 3.2E-82
SUPERFAMILY SSF81464 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 12 112 4.74E-25
Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain IPR011759 Cytochrome C oxidase subunit II, transmembrane domain 23 104 7.3E-13
Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain IPR002429 Cytochrome c oxidase subunit II-like C-terminal 121 240 1.1E-36
PRINTS PR01166 Cytochrome c oxidase subunit II signature 115 134 1.4E-39
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 274 348 1.2E-10
ProSiteProfiles PS50857 Cytochrome oxidase subunit II copper A binding domain profile. IPR002429 Cytochrome c oxidase subunit II-like C-terminal 116 253 38.994
PRINTS PR01166 Cytochrome c oxidase subunit II signature 162 183 1.4E-39
ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. IPR001505 Copper centre Cu(A) 187 235 -
PRINTS PR01166 Cytochrome c oxidase subunit II signature 81 93 1.4E-39
SUPERFAMILY SSF49503 IPR008972 Cupredoxin 116 257 9.84E-54
PRINTS PR01166 Cytochrome c oxidase subunit II signature 93 113 1.4E-39
Gene3D G3DSA:1.10.760.10 IPR036909 Cytochrome c-like domain superfamily 255 374 5.3E-28
PRINTS PR01166 Cytochrome c oxidase subunit II signature 224 241 1.4E-39
ProSiteProfiles PS50999 Cytochrome oxidase subunit II transmembrane region profile. IPR011759 Cytochrome C oxidase subunit II, transmembrane domain 20 115 15.518
PRINTS PR01166 Cytochrome c oxidase subunit II signature 206 223 1.4E-39
Gene3D G3DSA:2.60.40.420 IPR008972 Cupredoxin 115 252 3.2E-82
ProSiteProfiles PS51007 Cytochrome c family profile. IPR009056 Cytochrome c-like domain 273 353 10.178
SUPERFAMILY SSF46626 IPR036909 Cytochrome c-like domain superfamily 221 358 9.88E-24
PRINTS PR01166 Cytochrome c oxidase subunit II signature 186 206 1.4E-39
TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II IPR014222 Cytochrome c oxidase, subunit II 32 251 4.1E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.