Pseudomonas aeruginosa PAO1, PA0120

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 44 60 3.8E-8
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 11 70 1.7E-16
Pfam PF07729 FCD domain IPR011711 GntR, C-terminal 90 213 2.3E-28
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 74 6.27E-19
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 6 70 3.68123E-16
SUPERFAMILY SSF48008 GntR ligand-binding domain-like IPR008920 Transcription regulator FadR/GntR, C-terminal 88 218 2.88E-28
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 70 7.8E-18
SMART SM00895 FCD_2 IPR011711 GntR, C-terminal 90 214 1.9E-21
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 9 70 4.5E-17
Gene3D G3DSA:1.20.120.530 - IPR008920 Transcription regulator FadR/GntR, C-terminal 85 219 1.3E-28
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 30 44 3.8E-8
PANTHER PTHR43537 TRANSCRIPTIONAL REGULATOR, GNTR FAMILY - - 4 218 2.7E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.