Pseudomonas aeruginosa PAO1, PA0225

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 4 42 2.51003E-10
SUPERFAMILY SSF47413 IPR010982 Lambda repressor-like, DNA-binding domain superfamily 3 66 2.95E-18
Gene3D G3DSA:1.10.260.40 1 67 8.5E-19
Pfam PF07883 Cupin domain IPR013096 Cupin 2, conserved barrel 118 174 1.3E-13
Gene3D G3DSA:2.60.120.10 IPR014710 RmlC-like jelly roll fold 68 175 1.0E-21
SUPERFAMILY SSF51182 IPR011051 RmlC-like cupin domain superfamily 67 175 5.63E-24
ProSiteProfiles PS50943 Cro/C1-type HTH domain profile. IPR001387 Cro/C1-type helix-turn-helix domain 5 59 16.866
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 5 59 1.5E-16
SMART SM00530 IPR001387 Cro/C1-type helix-turn-helix domain 4 59 2.2E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.