Pseudomonas aeruginosa PAO1, PA0236

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 6 56 2.5E-17
SMART SM00346 IPR005471 Transcription regulator IclR, N-terminal 2 93 1.2E-19
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 6 76 1.07E-17
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 124 250 9.7E-19
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 4 76 2.3E-20
SUPERFAMILY SSF55781 70 251 1.63E-38
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 77 256 9.1E-43
ProSiteProfiles PS51077 IclR-type HTH domain profile. IPR005471 Transcription regulator IclR, N-terminal 3 65 17.229
ProSiteProfiles PS51078 IclR effector binding domain profile. IPR014757 Transcription regulator IclR, C-terminal 66 254 31.963

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.