Pseudomonas aeruginosa PAO1, PA0906 (alpR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006974 cellular response to DNA damage stimulus
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
26100878 Reviewed by curator
Biological Process GO:0001896 autolysis
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
26100878 Reviewed by curator
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
26100878 Reviewed by curator
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR40661 - - - 2 236 6.3E-62
FunFam G3DSA:2.10.109.10:FF:000016 HTH-type transcriptional regulator prtR - - 103 235 2.3E-81
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 3 61 2.49E-13
SMART SM00530 mbf_short4 IPR001387 Cro/C1-type helix-turn-helix domain 6 60 3.3E-13
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 7 60 1.0E-10
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 68 1.1E-20
Gene3D G3DSA:2.10.109.10 Umud Fragment, subunit A - - 109 235 3.0E-19
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 5 60 4.96967E-13
Pfam PF00717 Peptidase S24-like IPR015927 Peptidase S24/S26A/S26B/S26C 109 231 1.7E-25
SUPERFAMILY SSF51306 LexA/Signal peptidase IPR036286 LexA/Signal peptidase-like superfamily 101 233 6.54E-22
CDD cd06529 S24_LexA-like IPR039418 LexA-like 146 228 9.32656E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.