Pseudomonas aeruginosa PAO1, PA1818 (cadA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF009393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01276
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006520 cellular amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF009393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016831 carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF009393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Glutamate metabolism ECO:0000037
not_recorded
KEGG pae00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Lysine degradation ECO:0000037
not_recorded
PseudoCAP Arginine and proline metabolism ECO:0000037
not_recorded
PseudoCAP Urea cycle and metabolism of amino groups ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 149 599 1.21E-112
Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain IPR000310 Orn/Lys/Arg decarboxylase, major domain 149 582 0.0
CDD cd00615 Orn_deC_like IPR000310 Orn/Lys/Arg decarboxylase, major domain 150 469 7.24844E-123
PIRSF PIRSF009393 Orn_decarb IPR011193 Ornithine/lysine/arginine decarboxylase 3 751 0.0
Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IPR008286 Orn/Lys/Arg decarboxylase, C-terminal 607 736 7.6E-49
FunFam G3DSA:3.40.640.10:FF:000008 Lysine decarboxylase, inducible - - 149 454 6.2E-125
PANTHER PTHR45229 CONSTITUTIVE ORNITHINE DECARBOXYLASE IPR011193 Ornithine/lysine/arginine decarboxylase 10 744 0.0
Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IPR005308 Orn/Lys/Arg decarboxylase, N-terminal 22 143 6.0E-24
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 455 627 1.4E-64
Gene3D G3DSA:3.90.100.10 - - - 628 751 1.7E-43
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 149 454 2.3E-100
Gene3D G3DSA:3.40.50.2300 - - - 8 148 2.7E-31
SUPERFAMILY SSF55904 Ornithine decarboxylase C-terminal domain IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily 602 751 1.24E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.