Pseudomonas aeruginosa PAO1, PA1998 (dhcR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009896 positive regulation of catabolic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
19406895 Reviewed by curator
Molecular Function GO:0003700 DNA-binding transcription factor activity
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
19406895 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 91 289 4.7E-43
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 84 1.18E-23
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 1.1E-8
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 18 29 1.1E-8
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 39 1.1E-8
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 2.3E-25
CDD cd08440 PBP2_LTTR_like_4 - - 92 288 4.05242E-72
PANTHER PTHR30419 HTH-TYPE TRANSCRIPTIONAL REGULATOR YBHD - - 1 293 3.0E-82
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 84 1.8E-26
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 91 290 6.03E-40
Gene3D G3DSA:3.40.190.290 - - - 93 293 5.6E-46
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 4 62 6.4E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.