Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA3038
|
Name |
opdQ
Synonym: OccK6 |
Replicon | chromosome |
Genomic location | 3400684 - 3401949 (+ strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_251728.1 |
GI | 15598234 |
Affymetrix | PA3038_at |
Entrez | 882877 |
GenBank | AAG06426.1 |
INSDC | AAG06426.1 |
NCBI Locus Tag | PA3038 |
protein_id(GenBank) | gb|AAG06426.1|AE004728_12|gnl|PseudoCAP|PA3038 |
TIGR | NTL03PA03038 |
UniParc | UPI00000C58DF |
UniProtKB Acc | Q9HZH0 |
UniProtKB ID | Q9HZH0_PSEAE |
UniRef100 | UniRef100_A0A069QDK5 |
UniRef50 | UniRef50_W6QYC2 |
UniRef90 | UniRef90_A0A069QDK5 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
OpdQ
|
Synonyms |
probable porin |
Evidence for Translation |
Detected by MALDI-TOF/TOF (PMID:19333994).
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 0.20 |
Kyte-Doolittle Hydrophobicity Value | -0.469 |
Molecular Weight (kDa) | 46.7 |
Isoelectric Point (pI) | 7.09 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3T24 | MEMBRANE PROTEIN | 07/22/11 | Crystal structure of Pseudomonas aeruginosa OpdQ | Pseudomonas aeruginosa | 2.4 | X-RAY DIFFRACTION | 99.5 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 25 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG002549 (365 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA3038
Search term: opdQ
Search term: OpdQ
|
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen.
Imperi F, Ciccosanti F, Perdomo AB, Tiburzi F, Mancone C, Alonzi T, Ascenzi P, Piacentini M, Visca P, Fimia GM
Proteomics 2009 Apr;9(7):1901-15
PubMed ID: 19333994
|
The OpdQ porin of Pseudomonas aeruginosa is regulated by environmental signals associated with cystic fibrosis including nitrate-induced regulation involving the NarXL two-component system.
Fowler RC, Hanson ND
Microbiologyopen 2015 Dec;4(6):967-82
PubMed ID: 26459101
|
OccK channels from Pseudomonas aeruginosa exhibit diverse single-channel electrical signatures but conserved anion selectivity.
Liu J, Eren E, Vijayaraghavan J, Cheneke BR, Indic M, van den Berg B, Movileanu L
Biochemistry 2012 Mar 20;51(11):2319-30
PubMed ID: 22369314
|