Pseudomonas aeruginosa PAO1, PA3357 (dsdA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006520 cellular amino acid metabolic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0031363 N-terminal protein amino acid deamination
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
3053699 Reviewed by curator
Molecular Function GO:0008721 D-serine ammonia-lyase activity
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
26957519 Reviewed by curator
Biological Process GO:0046416 D-amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02035
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008721 D-serine ammonia-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02035
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00165
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006520 cellular amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00165
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Glycine, serine and threonine metabolism ECO:0000037
not_recorded
KEGG pae00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG (InterPro) 00260 Glycine, serine and threonine metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53686 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme 98 440 5.62E-55
TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase IPR011780 D-serine ammonia-lyase 10 440 4.8E-241
ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site 109 123 -
Gene3D G3DSA:3.40.50.1100 249 443 2.0E-27
Pfam PF00291 Pyridoxal-phosphate dependent enzyme IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme 97 398 2.6E-57
Gene3D G3DSA:3.40.50.1100 75 248 3.2E-26
Hamap MF_01030 D-serine dehydratase [dsdA]. IPR011780 D-serine ammonia-lyase 1 448 259.428

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.