Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Cellular Component | GO:0009276 | Gram-negative-bacterium-type cell wall | Inferred from Sequence or Structural Similarity | ECO:0000044 sequence similarity evidence |
||
Biological Process | GO:0042121 | alginic acid biosynthetic process | Inferred from Mutant Phenotype | ECO:0000015 mutant phenotype evidence |
12581364 | Reviewed by curator |
Biological Process | GO:0050896 | response to stimulus | Inferred from Direct Assay | ECO:0000314 direct assay evidence used in manual assertion |
8144447 | Reviewed by curator |
Biological Process | GO:0042121 | alginic acid biosynthetic process | Inferred from Direct Assay | ECO:0000314 direct assay evidence used in manual assertion |
8144447 | Reviewed by curator |
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
PseudoCyc | PWY-6082 | alginate biosynthesis | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
KEGG | pae00051 | Fructose and mannose metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCAP | Alginate biosynthesis |
ECO:0000037
not_recorded |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
SMART | SM00722 | complete | IPR006633 | Carbohydrate-binding/sugar hydrolysis domain | 262 | 422 | 9.3E-20 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 354 | 376 | 2200.0 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 305 | 327 | 81.0 |
NCBIfam | NF038177 | NCBIFAM: mannuronan 5-epimerase AlgG | - | - | 20 | 543 | 0.0 |
SUPERFAMILY | SSF51126 | Pectin lyase-like | IPR011050 | Pectin lyase fold/virulence factor | 164 | 465 | 4.19E-38 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 378 | 400 | 110.0 |
Gene3D | G3DSA:2.160.20.10 | - | IPR012334 | Pectin lyase fold | 76 | 499 | 0.0 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 401 | 423 | 7.2 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 329 | 352 | 15.0 |
NCBIfam | TIGR03804 | JCVI: parallel beta-helix repeat (two copies) | IPR022441 | Parallel beta-helix repeat-2 | 395 | 437 | 2.7E-6 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 243 | 270 | 220.0 |
SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 283 | 304 | 2200.0 |
Pfam | PF05048 | Periplasmic copper-binding protein (NosD) | IPR007742 | Periplasmic copper-binding protein NosD, beta helix domain | 288 | 438 | 1.7E-16 |