Pseudomonas aeruginosa PAO1, PA3545 (algG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009276 Gram-negative-bacterium-type cell wall
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0042121 alginic acid biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
12581364 Reviewed by curator
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
8144447 Reviewed by curator
Biological Process GO:0042121 alginic acid biosynthetic process
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
8144447 Reviewed by curator

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class
Cell wall / LPS / capsule Other PAO1 genes in this class
Adaptation, Protection Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc PWY-6082 alginate biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Alginate biosynthesis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00722 complete IPR006633 Carbohydrate-binding/sugar hydrolysis domain 262 422 9.3E-20
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 354 376 2200.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 305 327 81.0
NCBIfam NF038177 NCBIFAM: mannuronan 5-epimerase AlgG - - 20 543 0.0
SUPERFAMILY SSF51126 Pectin lyase-like IPR011050 Pectin lyase fold/virulence factor 164 465 4.19E-38
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 378 400 110.0
Gene3D G3DSA:2.160.20.10 - IPR012334 Pectin lyase fold 76 499 0.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 401 423 7.2
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 329 352 15.0
NCBIfam TIGR03804 JCVI: parallel beta-helix repeat (two copies) IPR022441 Parallel beta-helix repeat-2 395 437 2.7E-6
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 243 270 220.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 283 304 2200.0
Pfam PF05048 Periplasmic copper-binding protein (NosD) IPR007742 Periplasmic copper-binding protein NosD, beta helix domain 288 438 1.7E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.