Pseudomonas aeruginosa PAO1, PA3546 (algX)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042121 alginic acid biosynthetic process
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
15489449 Reviewed by curator
Biological Process GO:0042121 alginic acid biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
8550492 Reviewed by curator
Biological Process GO:0044010 single-species biofilm formation
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
15489449 Reviewed by curator
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
15489449 Reviewed by curator
Cellular Component GO:0009276 Gram-negative-bacterium-type cell wall
IDA
Inferred from Direct Assay
ECO:0000002
direct assay evidence
Cellular Component GO:0042597 periplasmic space
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
15489449 Reviewed by curator
Biological Process GO:0042121 alginic acid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14441
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PAO1 genes in this class
Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class
Adaptation, Protection Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Alginate biosynthesis ECO:0000037
not_recorded
PseudoCyc PWY-6082 alginate biosynthesis 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd14487 AlgX_C IPR031798 Alginate biosynthesis protein AlgX, C-terminal carbohydrate-binding module 337 461 4.2595E-60
Gene3D G3DSA:2.60.120.1380 - IPR038639 AlgX, C-terminal domain superfamily 346 463 5.1E-46
Pfam PF16824 C-terminal carbohydrate-binding module IPR031798 Alginate biosynthesis protein AlgX, C-terminal carbohydrate-binding module 346 467 4.6E-59
CDD cd14441 AlgX_N IPR034655 Alginate biosynthesis protein AlgX, N-terminal 43 348 0.0
Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IPR031811 AlgX/AlgJ, SGNH hydrolase-like domain 64 325 1.1E-82

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.