Pseudomonas aeruginosa PAO1, PA4505 (dppD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0071916 dipeptide transmembrane transporter activity
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 25338022 Reviewed by curator
Molecular Function GO:0042277 peptide binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA14_58390
 ECO:0000250
sequence similarity evidence used in manual assertion		 25338022 Reviewed by curator
Biological Process GO:0042938 dipeptide transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA14_58470
 ECO:0000250
sequence similarity evidence used in manual assertion		 25338022 Reviewed by curator
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01727
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01727
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015833 peptide transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01727
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01727 JCVI: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal 231 314 2.0E-22
PANTHER PTHR43297 OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD - - 1 316 3.7E-115
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 3 251 3.99E-65
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 319 5.5E-91
CDD cd03257 ABC_NikE_OppD_transporters - - 3 235 1.94144E-110
FunFam G3DSA:3.40.50.300:FF:000016 Oligopeptide ABC transporter ATP-binding component - - 1 320 2.6E-120
Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal 232 296 2.6E-16
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 31 230 3.1E-16
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 23 180 9.1E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.