Pseudomonas aeruginosa PAO1, PA4914 (amaR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 transcription factor activity, sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 IPR011991 Winged helix-turn-helix DNA-binding domain 4 88 2.9E-22
Gene3D G3DSA:3.40.190.10 181 266 5.0E-21
Coils Coil 29 49 -
SUPERFAMILY SSF46785 IPR011991 Winged helix-turn-helix DNA-binding domain 4 117 5.75E-23
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 12 69 1.8E-21
SUPERFAMILY SSF53850 94 299 3.08E-41
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 25 36 3.8E-9
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 46 57 3.8E-9
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 36 46 3.8E-9
Gene3D G3DSA:3.40.190.10 98 180 2.2E-19
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 8 65 28.663
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 295 2.9E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.