Pseudomonas aeruginosa PAO1, PA0002 (dnaN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006271 DNA strand elongation involved in DNA replication
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P0A988
ECO:0000250
sequence similarity evidence used in manual assertion
3519609 Reviewed by curator
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30478
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009360 DNA polymerase III complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30478
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30478
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02767
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02767
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Pyrimidine metabolism ECO:0000037
not_recorded
KEGG pae00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Purine metabolism ECO:0000037
not_recorded
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.10.150.10:FF:000003 Beta sliding clamp - - 249 367 2.7E-59
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 1 120 3.14E-29
CDD cd00140 beta_clamp IPR001001 DNA polymerase III, beta sliding clamp 1 366 0.0
PANTHER PTHR30478 DNA POLYMERASE III SUBUNIT BETA IPR001001 DNA polymerase III, beta sliding clamp 1 367 0.0
Pfam PF02767 DNA polymerase III beta subunit, central domain IPR022637 DNA polymerase III, beta sliding clamp, central 130 244 1.8E-39
Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain IPR022634 DNA polymerase III, beta sliding clamp, N-terminal 1 119 8.9E-42
Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain IPR022635 DNA polymerase III, beta sliding clamp, C-terminal 247 366 2.4E-40
FunFam G3DSA:3.10.150.10:FF:000001 Beta sliding clamp - - 1 123 5.2E-55
PIRSF PIRSF000804 DNA_pol_III_b IPR001001 DNA polymerase III, beta sliding clamp 1 367 2.9E-125
FunFam G3DSA:3.10.150.10:FF:000002 Beta sliding clamp - - 124 248 2.0E-61
SMART SM00480 pol35 IPR001001 DNA polymerase III, beta sliding clamp 17 363 0.0
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 125 248 2.9E-41
NCBIfam TIGR00663 JCVI: DNA polymerase III subunit beta IPR001001 DNA polymerase III, beta sliding clamp 1 367 2.5E-110
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 126 245 3.14E-31
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 249 367 1.4E-34
Gene3D G3DSA:3.10.150.10 DNA Polymerase III, subunit A, domain 2 - - 1 123 6.2E-50
SUPERFAMILY SSF55979 DNA clamp IPR046938 DNA clamp superfamily 246 367 7.25E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.