Pseudomonas aeruginosa PAO1, PA0003 (recF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000731 DNA synthesis involved in DNA repair
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
9108043 Reviewed by curator
Biological Process GO:0009411 response to UV
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
9108043 Reviewed by curator
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00617
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00617
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00617
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00617 RecF protein signature 1. IPR018078 DNA-binding, RecF, conserved site 118 138 -
Gene3D G3DSA:3.40.50.300 7 334 4.3E-84
Gene3D G3DSA:1.20.1050.90 IPR042174 DNA-binding RecF, domain 2 121 299 4.3E-84
ProSitePatterns PS00618 RecF protein signature 2. IPR018078 DNA-binding, RecF, conserved site 300 318 -
TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF IPR001238 DNA-binding, RecF 1 359 2.4E-115
Pfam PF02463 RecF/RecN/SMC N terminal domain IPR003395 RecF/RecN/SMC, N-terminal 3 357 7.7E-33
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 342 6.81E-35
Hamap MF_00365 DNA replication and repair protein RecF [recF]. IPR001238 DNA-binding, RecF 1 369 95.384

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.