Pseudomonas aeruginosa UCBPP-PA14, PA14_00180

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008649 rRNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00563
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001510 RNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22807
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01189
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01029
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01189 16S rRNA methyltransferase RsmB/F IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type 238 428 1.3E-62
FunFam G3DSA:3.30.70.1170:FF:000002 Ribosomal RNA small subunit methyltransferase B - - 170 227 3.4E-22
FunFam G3DSA:3.40.50.150:FF:000022 Ribosomal RNA small subunit methyltransferase B - - 231 431 2.0E-72
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 135 431 1.32E-71
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 365 381 4.6E-28
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 228 431 1.3E-63
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 248 258 4.6E-28
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 315 327 4.6E-28
Gene3D G3DSA:1.10.287.730 Helix hairpin bin - - 143 169 1.0E-8
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 219 233 4.6E-28
PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature IPR023267 RNA (C5-cytosine) methyltransferase 413 430 4.6E-28
CDD cd02440 AdoMet_MTases - - 246 370 1.64547E-6
PANTHER PTHR22807 NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING IPR023267 RNA (C5-cytosine) methyltransferase 122 432 6.2E-66
Gene3D G3DSA:1.10.940.10 - IPR035926 NusB-like superfamily 1 140 6.1E-33
Pfam PF01029 NusB family IPR006027 NusB/RsmB/TIM44 1 123 4.3E-20
Gene3D G3DSA:3.30.70.1170 Sun protein; domain 3 - - 170 227 2.2E-23
NCBIfam TIGR00563 JCVI: 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB IPR004573 rRNA small subunit methyltransferase B 7 430 1.0E-127
SUPERFAMILY SSF48013 NusB-like IPR035926 NusB-like superfamily 1 146 4.45E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.