Pseudomonas aeruginosa UCBPP-PA14, PA14_00400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 6 86 5.67E-24
Gene3D G3DSA:3.40.190.10 105 295 1.4E-51
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like 97 295 3.77835E-57
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 93 299 2.0E-37
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 9 98 8.1E-25
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 10 69 6.3E-24
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 36 46 7.1E-11
Gene3D G3DSA:3.40.190.10 165 268 1.4E-51
SUPERFAMILY SSF53850 97 300 2.53E-36
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 8 65 31.527
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 46 57 7.1E-11
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 25 36 7.1E-11
TIGRFAM TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor IPR017786 Transcription factor, choline sulphate-utilisation, putative 8 298 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.