Pseudomonas aeruginosa UCBPP-PA14, PA14_00600

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 4 61 2.20786E-10
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 9 61 3.1E-11
Gene3D G3DSA:1.10.260.40 1 75 2.4E-13
SMART SM00530 IPR001387 Cro/C1-type helix-turn-helix domain 6 61 3.3E-10
ProSiteProfiles PS50943 Cro/C1-type HTH domain profile. IPR001387 Cro/C1-type helix-turn-helix domain 7 61 13.408
SUPERFAMILY SSF47413 IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 65 1.75E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.