Pseudomonas aeruginosa UCBPP-PA14, PA14_01470

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF07729 FCD domain IPR011711 GntR, C-terminal 90 213 2.3E-28
PANTHER PTHR43537 TRANSCRIPTIONAL REGULATOR, GNTR FAMILY - - 4 218 2.7E-40
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 11 70 1.7E-16
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 74 6.27E-19
SUPERFAMILY SSF48008 GntR ligand-binding domain-like IPR008920 Transcription regulator FadR/GntR, C-terminal 88 218 2.88E-28
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 44 60 3.8E-8
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 30 44 3.8E-8
Gene3D G3DSA:1.20.120.530 - IPR008920 Transcription regulator FadR/GntR, C-terminal 85 219 1.3E-28
SMART SM00895 FCD_2 IPR011711 GntR, C-terminal 90 214 1.9E-21
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 9 70 4.5E-17
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 70 7.8E-18
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 6 70 3.68123E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.