Pseudomonas aeruginosa UCBPP-PA14, PA14_01930 (pcaR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02431
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046278 3,4-dihydroxybenzoate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02431
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class
Carbon compound catabolism Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000317 IclR family transcriptional regulator - - 20 99 5.1E-51
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 151 275 4.5E-35
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 100 279 9.7E-54
NCBIfam TIGR02431 JCVI: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR 30 276 5.5E-101
SUPERFAMILY SSF55781 GAF domain-like - - 98 277 4.56E-49
FunFam G3DSA:3.30.450.40:FF:000039 IclR family transcriptional regulator - - 102 278 2.1E-92
PANTHER PTHR30136 HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY - - 28 277 1.8E-73
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 21 99 6.7E-22
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 34 105 5.2E-11
SMART SM00346 iclrneu IPR005471 Transcription regulator IclR, N-terminal 33 121 3.0E-33
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 35 86 2.8E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.