Pseudomonas aeruginosa UCBPP-PA14, PA14_02870

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 12 68 4.6E-16
Gene3D G3DSA:3.40.190.290 96 308 2.2E-32
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 7 94 2.8E-21
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 5 116 5.99E-19
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 300 1.0E-38
Coils Coil 289 309 -
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 24 35 1.6E-5
SUPERFAMILY SSF53850 96 301 3.58E-36
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 7 64 18.396
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 45 56 1.6E-5
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 35 45 1.6E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.