Pseudomonas aeruginosa UCBPP-PA14, PA14_02910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS51078 IclR effector binding domain profile. IPR014757 Transcription regulator IclR, C-terminal 66 254 31.963
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 4 76 2.6E-20
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 124 250 9.7E-19
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 6 55 4.8E-17
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 6 76 1.6E-17
SMART SM00346 IPR005471 Transcription regulator IclR, N-terminal 2 93 6.7E-20
ProSiteProfiles PS51077 IclR-type HTH domain profile. IPR005471 Transcription regulator IclR, N-terminal 3 65 17.099
SUPERFAMILY SSF55781 70 251 1.63E-38
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 77 256 9.1E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.