Pseudomonas aeruginosa UCBPP-PA14, PA14_64190 (fis)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class
Transcriptional regulators Other UCBPP-PA14 genes in this class
Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 35 51 7.6E-12
MobiDBLite mobidb-lite consensus disorder prediction - - 1 35 -
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 66 104 3.2E-14
PIRSF PIRSF002097 DNA-bp_Fis IPR005412 DNA-binding protein Fis 9 107 5.8E-42
Gene3D G3DSA:1.10.10.60 - - - 13 106 1.8E-27
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 70 87 2.2E-10
FunFam G3DSA:1.10.10.60:FF:000006 DNA-binding protein Fis - - 13 107 2.3E-38
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 66 78 7.6E-12
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 87 107 2.2E-10
PANTHER PTHR47918 DNA-BINDING PROTEIN FIS - - 13 106 3.6E-40
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 24 106 8.96E-23
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 51 66 7.6E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.