Pseudomonas aeruginosa UCBPP-PA14, PA14_70290 (sphR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 236 345 3.5E-24
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 264 340 2.1E-19
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 292 341 6.27E-11
Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal 31 214 1.3E-35
PANTHER PTHR47894 HTH-TYPE TRANSCRIPTIONAL REGULATOR GADX - - 13 342 1.2E-92
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 257 339 5.5E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.