Pseudomonas putida KT2440, PP_3108 (tke2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004519 endonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.540.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other KT2440 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1243 1262 1.2E-13
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 859 896 2.6E-6
PANTHER PTHR11219 TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE - - 1004 1262 1.4E-27
Gene3D G3DSA:3.90.540.10 Colicin/pyocin, DNase domain IPR037146 Colicin/pyocin, DNase domain superfamily 1275 1367 4.1E-17
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 699 736 1.3E-4
Pfam PF05488 PAAR motif IPR008727 PAAR motif 73 138 1.8E-16
CDD cd14742 PAAR_RHS - - 75 148 7.15102E-36
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1166 1186 1.2E-13
PRINTS PR00394 RHS protein signature IPR001826 RHS protein 1220 1240 1.2E-13
Gene3D G3DSA:2.180.10.10 - - - 801 1274 2.9E-82
Pfam PF20148 Domain of unknown function (DUF6531) IPR045351 Domain of unknown function DUF6531 232 305 5.0E-21
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 737 777 1.1E-4
SUPERFAMILY SSF54060 His-Me finger endonucleases IPR044925 His-Me finger superfamily 1232 1365 4.83E-30
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 547 585 1.2E-5
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 859 894 1.2E-7
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 505 545 1.4E-4
Gene3D G3DSA:2.60.200.60 - - - 62 148 7.4E-23
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 676 714 2.2E-5
NCBIfam TIGR03696 JCVI: RHS repeat-associated core domain IPR022385 Rhs repeat-associated core 1199 1274 5.8E-24
Pfam PF03527 RHS protein IPR001826 RHS protein 1172 1204 2.1E-17
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 527 567 5.2E-9
Gene3D G3DSA:2.180.10.10 - - - 438 620 1.2E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.