Pseudomonas putida KT2440, PP_3386 (vgrG4)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other KT2440 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppu03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF69349 Phage fibre proteins - - 462 671 7.38E-51
Pfam PF04717 Type VI secretion system/phage-baseplate injector OB domain IPR006531 Gp5/Type VI secretion system Vgr protein, OB-fold domain 406 473 7.7E-12
SUPERFAMILY SSF69255 gp5 N-terminal domain-like - - 384 471 1.99E-30
Gene3D G3DSA:2.30.110.50 - - - 22 347 2.1E-77
Gene3D G3DSA:2.40.50.230 - IPR037026 Vgr protein, OB-fold domain superfamily 378 476 1.3E-36
NCBIfam TIGR01646 JCVI: type VI secretion system tip protein VgrG IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 21 523 7.9E-127
SUPERFAMILY SSF69279 Phage tail proteins - - 15 183 1.11E-50
Pfam PF05954 Phage tail baseplate hub (GPD) - - 29 347 8.4E-66
NCBIfam TIGR03361 JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 12 541 0.0
Gene3D G3DSA:4.10.220.110 - - - 241 304 2.1E-77
SUPERFAMILY SSF69279 Phage tail proteins - - 213 385 1.87E-28
PANTHER PTHR32305 - - - 22 537 1.8E-87
Gene3D G3DSA:3.55.50.10 - - - 97 206 2.1E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.