Pseudomonas putida KT2440, PP_3832 (rsmE)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006109 | regulation of carbohydrate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:SSF117130
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003723 | RNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF117130
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006402 | mRNA catabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:SSF117130
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppu02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppu02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00202 | JCVI: carbon storage regulator CsrA | IPR003751 | Translational regulator CsrA | 1 | 53 | 7.3E-27 |
| Hamap | MF_00167 | Translational regulator CsrA [csrA]. | IPR003751 | Translational regulator CsrA | 1 | 64 | 17.41304 |
| PANTHER | PTHR34984 | CARBON STORAGE REGULATOR | IPR003751 | Translational regulator CsrA | 1 | 57 | 1.5E-22 |
| FunFam | G3DSA:2.60.40.4380:FF:000002 | Translational regulator CsrA | - | - | 1 | 61 | 9.5E-24 |
| Pfam | PF02599 | Global regulator protein family | IPR003751 | Translational regulator CsrA | 1 | 52 | 2.2E-26 |
| SUPERFAMILY | SSF117130 | CsrA-like | IPR036107 | Carbon storage regulator superfamily | 1 | 53 | 8.63E-21 |
| Gene3D | G3DSA:2.60.40.4380 | Translational regulator CsrA | IPR036107 | Carbon storage regulator superfamily | 1 | 58 | 1.9E-26 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.