Pseudomonas putida KT2440, PP_4085 (tke4)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other KT2440 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.60.200.60 - - - 189 248 1.9E-15
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 692 725 3.5E-8
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 965 994 1.7E-4
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 818 852 1.5E-8
NCBIfam TIGR03696 JCVI: RHS repeat-associated core domain IPR022385 Rhs repeat-associated core 1331 1407 1.6E-20
Pfam PF15652 HNH/Endo VII superfamily toxin with a SHH signature IPR028900 Tox-SHH domain 1424 1525 7.3E-37
Gene3D G3DSA:2.180.10.10 - - - 979 1407 2.8E-68
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 800 837 8.8E-9
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 631 668 2.1E-7
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 921 955 6.7E-7
CDD cd14742 PAAR_RHS - - 106 248 3.55895E-24
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 965 1000 1.1E-7
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 839 875 2.3E-5
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 703 730 0.0019
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 764 796 0.0057
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 839 874 6.5E-5
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 677 711 1.0E-4
CDD cd14740 PAAR_4 - - 83 133 8.0033E-4
PANTHER PTHR32305 - - - 639 1407 4.8E-27
Pfam PF05488 PAAR motif IPR008727 PAAR motif 192 235 7.2E-11
Gene3D G3DSA:2.180.10.10 - - - 723 976 4.4E-38
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 631 664 7.8E-6
SUPERFAMILY SSF63829 Calcium-dependent phosphotriesterase - - 618 825 3.14E-5
Pfam PF20148 Domain of unknown function (DUF6531) IPR045351 Domain of unknown function DUF6531 289 369 7.8E-17
Pfam PF03527 RHS protein IPR001826 RHS protein 1301 1338 7.4E-15
NCBIfam TIGR01643 JCVI: YD repeat (two copies) IPR006530 YD repeat 734 774 0.0023
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 921 950 1.3E-5
Pfam PF05593 RHS Repeat IPR031325 RHS repeat 755 791 2.8E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.