Pseudomonas aeruginosa PAO1, PA0038

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA0038
Name
Replicon chromosome
Genomic location 40190 - 40405 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_248728.1
GI 15595236
Affymetrix PA0038_at
DNASU PaCD00006018
Entrez 879209
GenBank AAG03428.1
INSDC AAG03428.1
NCBI Locus Tag PA0038
protein_id(GenBank) gb|AAG03428.1|AE004443_6|gnl|PseudoCAP|PA0038
TIGR NTL03PA00039
UniParc UPI00000C4EF8
UniProtKB Acc Q9I794
UniProtKB ID Q9I794_PSEAE
UniRef100 UniRef100_W0YKJ9
UniRef50 UniRef50_A6UXA1
UniRef90 UniRef90_A6UXA1

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 4
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 0.18
Kyte-Doolittle Hydrophobicity Value -0.318
Molecular Weight (kDa) 7.9
Isoelectric Point (pI) 7.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 126 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000038 (573 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0038

Transposon Insertions in PAO1

Type ISphoA/hah insertion site
Mutant ID UWGC: 36552
Genomic Position 40360
Position in ORF 171(216)
Reference 14617778
Type ISphoA/hah insertion site
Mutant ID UWGC: 36577
Genomic Position 40360
Position in ORF 171(216)
Reference 14617778

Transposon Insertions in Orthologs

Type MAR2xT7 transposon (wild type background) insertion site
Strain Pseudomonas aeruginosa UCBPP-PA14
Locus Tag PA14_00470
Mutant ID PA14NR: 26660
Genomic Position 40229
Position in ORF 19(216)
Reference 16477005

References

No references are associated with this feature.