Pseudomonas aeruginosa PAO1, PA0084 (tssC1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA0084
Name
tssC1
Replicon chromosome
Genomic location 101778 - 103274 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1

Cross-References

RefSeq NP_248774.1
GI 15595282
Affymetrix PA0084_at
Entrez 879464
GenBank AAG03474.1
INSDC AAG03474.1
NCBI Locus Tag PA0084
protein_id(GenBank) gb|AAG03474.1|AE004447_7|gnl|PseudoCAP|PA0084
TIGR NTL03PA00085
UniParc UPI00000C4F25
UniProtKB Acc Q9I748
UniProtKB ID Q9I748_PSEAE
UniRef100 UniRef100_Q9I748
UniRef50 UniRef50_Q4K3N7
UniRef90 UniRef90_Q4K3N7

Product

Feature Type CDS
Coding Frame 1
Product Name
TssC1
Product Name Confidence: Class 2
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -16.24
Kyte-Doolittle Hydrophobicity Value -0.428
Molecular Weight (kDa) 55.8
Isoelectric Point (pI) 4.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Virulence Evidence

Source 1
Database VFDB : VF0334
Category Hcp secretion island-1 encoded type VI secretion system (H-T6SS)
Evidence ECO:0000305
curator inference used in manual assertion
Host Organism
Notes
Reference 16763151

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 111 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000083 (1277 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA0084
Search term: tssC1
Search term: TssC1

Transposon Insertions in PAO1

Type ISlacZ/hah insertion site
Mutant ID UWGC: 246
Genomic Position 102483
Position in ORF 706(1497)
Reference 14617778
Type Confirmed ISlacZ/hah insertion site
Mutant ID UWGC: 250
Genomic Position 102483
Position in ORF 706(1497)
Reference 14617778

Transposon Insertions in Orthologs

References

A type VI secretion system of Pseudomonas aeruginosa targets a toxin to bacteria.
Hood RD, Singh P, Hsu F, Güvener T, Carl MA, Trinidad RR, Silverman JM, Ohlson BB, Hicks KG, Plemel RL, Li M, Schwarz S, Wang WY, Merz AJ, Goodlett DR, Mougous JD
Cell Host Microbe 2010 Jan;7(1):25-37
PubMed ID: 20114026
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology (Reading, Engl.) 2007 Aug;153(Pt 8):2689-99
PubMed ID: 17660433