Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA0579
|
Name |
rpsU
|
Replicon | chromosome |
Genomic location | 638900 - 639115 (- strand) |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_249270.1 |
GI | 15595776 |
Affymetrix | PA0579_rpsU_at |
DNASU | PaCD00006253 |
Entrez | 880307 |
GenBank | AAG03968.1 |
INSDC | AAG03968.1 |
NCBI Locus Tag | PA0579 |
protein_id(GenBank) | gb|AAG03968.1|AE004494_4|gnl|PseudoCAP|PA0579 |
TIGR | NTL03PA00580 |
UniParc | UPI0000134E83 |
UniProtKB Acc | Q9I5V8 |
UniProtKB ID | RS21_PSEAE |
UniRef100 | UniRef100_C1DIY4 |
UniRef50 | UniRef50_B4RY34 |
UniRef90 | UniRef90_C1DIY4 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S21
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 13.19 |
Kyte-Doolittle Hydrophobicity Value | -1.193 |
Molecular Weight (kDa) | 8.5 |
Isoelectric Point (pI) | 11.43 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 98.4 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 98.4 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 358 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000562 (493 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA0579
Search term: rpsU
Search term: 30S ribosomal protein S21
|
The function of ribosomal protein S21 in protein synthesis.
Van Duin J, Wijnands R
Eur J Biochem 1981 Sep 1;118(3):615-9
PubMed ID: 7028483
|
The operon that encodes the sigma subunit of RNA polymerase also encodes ribosomal protein S21 and DNA primase in E. coli K12.
Burton ZF, Gross CA, Watanabe KK, Burgess RR
Cell 1983 Feb;32(2):335-49
PubMed ID: 6186393
|
Regulation of the rpsU-dnaG-rpoD macromolecular synthesis operon and the initiation of DNA replication in Escherichia coli K-12.
Lupski JR, Smiley BL, Godson GN
Mol Gen Genet 1983;189(1):48-57
PubMed ID: 6222240
|
Nucleotide sequence of the rpsU-dnaG-rpoD operon from Salmonella typhimurium and a comparison of this sequence with the homologous operon of Escherichia coli.
Erickson BD, Burton ZF, Watanabe KK, Burgess RR
Gene 1985;40(1):67-78
PubMed ID: 3005129
|