Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA1119
|
Name |
yfiB
|
Replicon | chromosome |
Genomic location | 1212717 - 1213223 (- strand) |
Transposon Mutants | 3 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_249810.1 |
GI | 15596316 |
Affymetrix | PA1119_at |
DNASU | PaCD00006516 |
Entrez | 881938 |
GenBank | AAG04508.1 |
INSDC | AAG04508.1 |
NCBI Locus Tag | PA1119 |
protein_id(GenBank) | gb|AAG04508.1|AE004542_4|gnl|PseudoCAP|PA1119 |
TIGR | NTL03PA01120 |
UniParc | UPI00000C525A |
UniProtKB Acc | Q9I4L6 |
UniProtKB ID | Q9I4L6_PSEAE |
UniRef100 | UniRef100_W0YNR6 |
UniRef50 | UniRef50_A6V969 |
UniRef90 | UniRef90_A6V969 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
YfiB
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 1.45 |
Kyte-Doolittle Hydrophobicity Value | -0.315 |
Molecular Weight (kDa) | 18.4 |
Isoelectric Point (pI) | 8.49 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
4ZHY | TRANSCRIPTION/SIGNALING PROTEIN | 04/27/15 | Crystal structure of a bacterial signalling complex | Pseudomonas aeruginosa PAO1 | 1.969 | X-RAY DIFFRACTION | 98.2 |
5Y61 | SIGNALING PROTEIN | 08/10/17 | YfiB-YfiR complexed with GMP | Pseudomonas aeruginosa | 2.99 | X-RAY DIFFRACTION | 99.3 |
5EB0 | MEMBRANE PROTEIN | 10/17/15 | crystal form II of YfiB belonging to P41 | Pseudomonas aeruginosa PAO1 | 2.8 | X-RAY DIFFRACTION | 100.0 |
5EAZ | MEMBRANE PROTEIN | 10/17/15 | crystal form I of YfiB belonging to space groups P21 | Pseudomonas aeruginosa PAO1 | 2.151 | X-RAY DIFFRACTION | 100.0 |
5EB1 | MEMBRANE PROTEIN/TRANSCRIPTION | 10/17/15 | the YfiB-YfiR complex | Pseudomonas aeruginosa PAO1 | 1.8 | X-RAY DIFFRACTION | 99.3 |
6IKJ | SIGNALING PROTEIN | 10/16/18 | Crystal structure of YfiB(F48S) | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 1.76 | X-RAY DIFFRACTION | 99.4 |
4ZHV | SIGNALING PROTEIN | 04/27/15 | Crystal structure of a bacterial signalling protein | Pseudomonas aeruginosa PAO1 | 1.585 | X-RAY DIFFRACTION | 100.0 |
4ZHW | SIGNALING PROTEIN | 04/27/15 | Crystal structure of a bacterial signalling protein (N-terminal truncation) | Pseudomonas aeruginosa PAO1 | 1.391 | X-RAY DIFFRACTION | 100.0 |
6IKI | SIGNALING PROTEIN | 10/16/18 | Crystal structure of YfiB(W55L) | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.204 | X-RAY DIFFRACTION | 99.4 |
6IKK | SIGNALING PROTEIN | 10/16/18 | Crystal structure of YfiB(L43P) in complex with YfiR | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.19 | X-RAY DIFFRACTION | 99.4 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 407 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001079 (445 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA1119
Search term: yfiB
Search term: YfiB
|
Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
|
YfiBNR mediates cyclic di-GMP dependent small colony variant formation and persistence in Pseudomonas aeruginosa.
Malone JG, Jaeger T, Spangler C, Ritz D, Spang A, Arrieumerlou C, Kaever V, Landmann R, Jenal U
PLoS Pathog 2010 Mar 12;6(3):e1000804
PubMed ID: 20300602
|