Pseudomonas aeruginosa PAO1, PA1261 (lhpR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA1261
Name
lhpR
Replicon chromosome
Genomic location 1369418 - 1370092 (- strand)
Transposon Mutants 1 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_249952.1
GI 15596458
Affymetrix PA1261_at
Entrez 881351
GenBank AAG04650.1
INSDC AAG04650.1
NCBI Locus Tag PA1261
protein_id(GenBank) gb|AAG04650.1|AE004555_10|gnl|PseudoCAP|PA1261
TIGR NTL03PA01262
UniParc UPI00000C52D7
UniProtKB Acc Q9I483
UniProtKB ID Q9I483_PSEAE
UniRef100 UniRef100_U8N3V3
UniRef50 UniRef50_G8MBA7
UniRef90 UniRef90_A6V8U9

Product

Feature Type CDS
Coding Frame 1
Product Name
Transcriptional regulator, LhpR
Product Name Confidence: Class 1
Evidence for Translation
Charge (pH 7) 10.27
Kyte-Doolittle Hydrophobicity Value -0.321
Molecular Weight (kDa) 24.7
Isoelectric Point (pI) 9.83

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 396 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001212 (480 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1261
Search term: lhpR

Transposon Insertions in PAO1

Type ISphoA/hah insertion site
Mutant ID UWGC: 50856
Genomic Position 1369493
Position in ORF 76(675)
Reference 14617778

Transposon Insertions in Orthologs

Type MAR2xT7 transposon (wild type background) insertion site
Strain Pseudomonas aeruginosa UCBPP-PA14
Locus Tag PA14_47910
Mutant ID PA14NR: 28947
Genomic Position 4264892
Position in ORF 389(675)
Reference 16477005

References

Molecular characterization of LhpR in control of hydroxyproline catabolism and transport in Pseudomonas aeruginosa PAO1.
Li G(1), Lu CD(2).
Microbiology. 2016 Jul;162(7):1232-42.
PubMed ID: 27145750