Pseudomonas aeruginosa PAO1, PA1998 (dchR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA1998
Name
dchR
Synonym: dhcR
Replicon chromosome
Genomic location 2184475 - 2185395 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_250688.1
GI 15597194
Affymetrix PA1998_at
DNASU PaCD00006893
Entrez 879084
GenBank AAG05386.1
INSDC AAG05386.1
NCBI Locus Tag PA1998
protein_id(GenBank) gb|AAG05386.1|AE004626_5|gnl|PseudoCAP|PA1998
TIGR NTL03PA01998
UniParc UPI00000C554D
UniProtKB Acc Q9I2B1
UniProtKB ID Q9I2B1_PSEAE
UniRef100 UniRef100_Q9I2B1
UniRef50 UniRef50_Q9I2B1
UniRef90 UniRef90_Q9I2B1

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator, DchR
Product Name Confidence: Class 1
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -2.13
Kyte-Doolittle Hydrophobicity Value 0.031
Molecular Weight (kDa) 33.9
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 547 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003437 (1107 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1998
Search term: dchR

Transposon Insertions in PAO1

Type Confirmed ISlacZ/hah insertion site
Mutant ID UWGC: 3
Genomic Position 2184888
Position in ORF 414(921)
Reference 14617778
Type ISphoA/hah insertion site
Mutant ID UWGC: 34189
Genomic Position 2184985
Position in ORF 511(921)
Reference 14617778

Transposon Insertions in Orthologs

Type MAR2xT7 transposon (wild type background) insertion site
Strain Pseudomonas aeruginosa UCBPP-PA14
Locus Tag PA14_38680
Mutant ID PA14NR: 26061
Genomic Position 3448940
Position in ORF 148(921)
Reference 16477005

References

Identification of genes required for Pseudomonas aeruginosa carnitine catabolism.
Wargo MJ, Hogan DA.
Microbiology. 2009 Jul;155(Pt 7):2411-9.
PubMed ID: 19406895
Molecular characterization of lysR-lysXE, gcdR-gcdHG and amaR-amaAB operons for lysine export and catabolism: a comprehensive lysine catabolic network in Pseudomonas aeruginosa PAO1.
Madhuri Indurthi S(1), Chou HT(1), Lu CD(2).
Microbiology. 2016 May;162(5):876-88.
PubMed ID: 26967762