Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA1998
|
Name |
dhcR
|
Replicon | chromosome |
Genomic location | 2184475 - 2185395 (- strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 3 transposon mutants in orthologs |
Comment | Deletion of dhcR or transposon insertions into the coding sequence result in a strain unable to grow using L-carnitine as a sole carbon source. DhcR regulates the transcriptional induction of the adjacent dhcAB genes in response to an L-carnitine catabolite predicted to be 3-dehydrocarnitine. |
RefSeq | NP_250688.1 |
GI | 15597194 |
Affymetrix | PA1998_at |
DNASU | PaCD00006893 |
Entrez | 879084 |
GenBank | AAG05386.1 |
INSDC | AAG05386.1 |
NCBI Locus Tag | PA1998 |
protein_id(GenBank) | gb|AAG05386.1|AE004626_5|gnl|PseudoCAP|PA1998 |
TIGR | NTL03PA01998 |
UniParc | UPI00000C554D |
UniProtKB Acc | Q9I2B1 |
UniProtKB ID | Q9I2B1_PSEAE |
UniRef100 | UniRef100_Q9I2B1 |
UniRef50 | UniRef50_Q9I2B1 |
UniRef90 | UniRef90_Q9I2B1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
transcriptional regulator, DhcR
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | -2.13 |
Kyte-Doolittle Hydrophobicity Value | 0.031 |
Molecular Weight (kDa) | 33.9 |
Isoelectric Point (pI) | 6.52 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 547 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG003437 (1043 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA1998
Search term: dhcR
Search term: transcriptional regulator, DhcR
|
Identification of genes required for Pseudomonas aeruginosa carnitine catabolism.
Wargo MJ, Hogan DA
Microbiology (Reading) 2009 Jul;155(Pt 7):2411-2419
PubMed ID: 19406895
|
Molecular characterization of lysR-lysXE, gcdR-gcdHG and amaR-amaAB operons for lysine export and catabolism: a comprehensive lysine catabolic network in Pseudomonas aeruginosa PAO1.
Madhuri Indurthi S, Chou HT, Lu CD
Microbiology (Reading) 2016 May;162(5):876-888
PubMed ID: 26967762
|