Pseudomonas aeruginosa PAO1, PA2054 (cynR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA2054
Name
cynR
Replicon chromosome
Genomic location 2247273 - 2248160 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_250744.1
GI 15597250
Affymetrix PA2054_cynR_at
Entrez 878112
GenBank AAG05442.1
INSDC AAG05442.1
NCBI Locus Tag PA2054
protein_id(GenBank) gb|AAG05442.1|AE004632_1|gnl|PseudoCAP|PA2054
TIGR NTL03PA02054
UniParc UPI00000C5577
UniProtKB Acc Q9I261
UniProtKB ID Q9I261_PSEAE
UniRef100 UniRef100_Q9I261
UniRef50 UniRef50_Q9I261
UniRef90 UniRef90_Q9I261

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator CynR
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) -0.13
Kyte-Doolittle Hydrophobicity Value -0.021
Molecular Weight (kDa) 32.5
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 539 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003393 (439 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA2054
Search term: cynR

Human Homologs

References

The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family.
Sung YC, Fuchs JA
J Bacteriol 1992 Jun;174(11):3645-50
PubMed ID: 1592818