Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA2525
|
Name |
opmB
Synonym: opmB |
Replicon | chromosome |
Genomic location | 2846283 - 2847779 (- strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 2 transposon mutants in orthologs |
RefSeq | NP_251215.1 |
GI | 15597721 |
Affymetrix | PA2525_at |
Entrez | 878719 |
GenBank | AAG05913.1 |
INSDC | AAG05913.1 |
NCBI Locus Tag | PA2525 |
protein_id(GenBank) | gb|AAG05913.1|AE004680_1|gnl|PseudoCAP|PA2525 |
TIGR | NTL03PA02525 |
UniParc | UPI0000001FD8 |
UniProtKB Acc | Q9I0V8 |
UniProtKB ID | Q9I0V8_PSEAE |
UniRef100 | UniRef100_G3XCM8 |
UniRef50 | UniRef50_B2VFT0 |
UniRef90 | UniRef90_G3XCM8 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
OpmB
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | -7.05 |
Kyte-Doolittle Hydrophobicity Value | -0.238 |
Molecular Weight (kDa) | 53.9 |
Isoelectric Point (pI) | 5.11 |
Individual Mappings | |
Additional evidence for subcellular localization |
Identified using the Resistance Gene Identifier (RGI)
Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
OpmB | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC, to form the efflux pump system MuxABC-OpmB. [PMID:12445646] | ARO:3004072 | protein homolog model | Perfect | 943.3 | 100.0 | 3.2.5 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 334 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG003040 (534 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA2525
Search term: opmB
Search term: OpmB
|
Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
|
Gene cloning and characteristics of the RND-type multidrug efflux pump MuxABC-OpmB possessing two RND components in Pseudomonas aeruginosa.
Mima T, Kohira N, Li Y, Sekiya H, Ogawa W, Kuroda T, Tsuchiya T
Microbiology (Reading) 2009 Nov;155(Pt 11):3509-3517
PubMed ID: 19713238
|