Pseudomonas aeruginosa PAO1, PA3311 (nbdA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3311
Name
nbdA
Replicon chromosome
Genomic location 3712560 - 3714911 (+ strand)
Transposon Mutants 3 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_252001.1
GI 15598507
Affymetrix PA3311_at
Entrez 882476
GenBank AAG06699.1
INSDC AAG06699.1
NCBI Locus Tag PA3311
protein_id(GenBank) gb|AAG06699.1|AE004753_7|gnl|PseudoCAP|PA3311
TIGR NTL03PA03311
UniParc UPI00000C59A8
UniProtKB Acc Q9HYT3
UniProtKB ID Y3311_PSEAE
UniRef100 UniRef100_Q9HYT3
UniRef50 UniRef50_Q9HYT3
UniRef90 UniRef90_Q9HYT3

Product

Feature Type CDS
Coding Frame 1
Product Name
NbdA
Product Name Confidence: Class 1
Synonyms NO-induced biofilm dispersion locus A
Evidence for Translation
Charge (pH 7) 6.28
Kyte-Doolittle Hydrophobicity Value 0.078
Molecular Weight (kDa) 86.8
Isoelectric Point (pI) 7.69

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 457 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002307 (481 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3311
Search term: nbdA
Search term: NbdA

Human Homologs

References

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
NO-induced biofilm dispersion in Pseudomonas aeruginosa is mediated by an MHYT domain-coupled phosphodiesterase.
Li Y, Heine S, Entian M, Sauer K, Frankenberg-Dinkel N
J Bacteriol 2013 Aug;195(16):3531-42
PubMed ID: 23729646