Pseudomonas aeruginosa PAO1, PA5380 (gbdR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA5380
Name
gbdR
Synonym: gbdR
Replicon chromosome
Genomic location 6058673 - 6059776 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 4 transposon mutants in orthologs

Cross-References

RefSeq NP_254067.1
GI 15600573
Affymetrix PA5380_at
DNASU PaCD00008326
Entrez 881137
GenBank AAG08765.1
INSDC AAG08765.1
NCBI Locus Tag PA5380
protein_id(GenBank) gb|AAG08765.1|AE004950_8|gnl|PseudoCAP|PA5380
TIGR NTL03PA05381
UniParc UPI00000C5FD1
UniProtKB Acc Q9HTI4
UniProtKB ID Q9HTI4_PSEAE
UniRef100 UniRef100_W0Z3I7
UniRef50 UniRef50_Q4K4L5
UniRef90 UniRef90_A6VEJ2

Product

Feature Type CDS
Coding Frame 1
Product Name
GbdR
Product Name Confidence: Class 1
Synonyms glycine betaine- and dimethylglycine-responsive regulator
GbdR
Evidence for Translation
Charge (pH 7) 3.92
Kyte-Doolittle Hydrophobicity Value -0.162
Molecular Weight (kDa) 41.0
Isoelectric Point (pI) 8.01

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 442 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001883 (1422 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5380
Search term: gbdR
Search term: GbdR

Human Homologs

References

Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism.
Wargo MJ, Szwergold BS, Hogan DA
J Bacteriol 2008 Apr;190(8):2690-9
PubMed ID: 17951379