Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5387
|
Name |
cdhC
|
Replicon | chromosome |
Genomic location | 6064899 - 6065783 (- strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
Comment | Deletion of cdhC or transposon insertion into the coding sequence results in a strain unable to grow using L-carnitine as a sole carbon source. The specific function of CdhC in carnitine catabolism is not known but bioinformatic analysis supports the strong conservation of the cdhCAB genes in all species known to aerobically catabolize L-carnitine. |
RefSeq | NP_254074.1 |
GI | 15600580 |
Affymetrix | PA5387_at |
DNASU | PaCD00008329 |
Entrez | 880508 |
GenBank | AAG08772.1 |
INSDC | AAG08772.1 |
NCBI Locus Tag | PA5387 |
protein_id(GenBank) | gb|AAG08772.1|AE004951_6|gnl|PseudoCAP|PA5387 |
TIGR | NTL03PA05388 |
UniParc | UPI00000C5FD8 |
UniProtKB Acc | Q9HTH7 |
UniProtKB ID | Q9HTH7_PSEAE |
UniRef100 | UniRef100_W0Z0H5 |
UniRef50 | UniRef50_G8Q2F7 |
UniRef90 | UniRef90_W0Z0H5 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
CdhC, Carnitine dehydrogenase-related gene C
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -7.70 |
Kyte-Doolittle Hydrophobicity Value | -0.067 |
Molecular Weight (kDa) | 31.5 |
Isoelectric Point (pI) | 5.08 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 147 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004946 (489 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5387
Search term: cdhC
Search term: CdhC, Carnitine dehydrogenase-related gene C
|