Pseudomonas aeruginosa UCBPP-PA14, PA14_26600 (sbrI)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_26600
Name
sbrI
Replicon chromosome
Genomic location 2318037 - 2318621 (+ strand)
Transposon Mutants 1 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 5 transposon mutants in orthologs

Cross-References

RefSeq YP_790278.1
GI 116050899
Entrez 4380943
INSDC ABJ12135.1
NCBI Locus Tag PA14_26600
UniParc UPI00000C586B
UniProtKB Acc Q02P58
UniProtKB ID Q02P58_PSEAB
UniRef100 UniRef100_W0YSR6
UniRef50 UniRef50_Q4KKB3
UniRef90 UniRef90_A6V3J5

Product

Feature Type CDS
Coding Frame 1
Product Name
SbrI
Product Name Confidence: Class 1
Synonyms RNA polymerase sigma factor
Evidence for Translation
Charge (pH 7) -1.59
Kyte-Doolittle Hydrophobicity Value -0.676
Molecular Weight (kDa) 22.3
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 482 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001286 (856 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_26600
Search term: sbrI
Search term: SbrI

Human Homologs

References

σ Factor and Anti-σ Factor That Control Swarming Motility and Biofilm Formation in Pseudomonas aeruginosa.
McGuffie BA, Vallet-Gely I, Dove SL
J. Bacteriol. 2015 Nov;198(5):755-65
PubMed ID: 26620262