Strain |
Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest |
Locus Tag |
PA14_51880
|
Name |
oprD
|
Replicon | chromosome |
Genomic location | 4606220 - 4607551 (+ strand) |
Transposon Mutants | 2 transposon mutants in UCBPP-PA14 |
Transposon Mutants in orthologs | 12 transposon mutants in orthologs |
RefSeq | YP_792316.1 |
GI | 116048883 |
Entrez | 4380036 |
INSDC | ABJ10119.1 |
NCBI Locus Tag | PA14_51880 |
UniParc | UPI0000E44B7B |
UniProtKB Acc | Q02IC0 |
UniProtKB ID | Q02IC0_PSEAB |
UniRef100 | UniRef100_Q02IC0 |
UniRef50 | UniRef50_P32722 |
UniRef90 | UniRef90_P32722 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -14.55 |
Kyte-Doolittle Hydrophobicity Value | -0.463 |
Molecular Weight (kDa) | 48.2 |
Isoelectric Point (pI) | 4.63 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
4FOZ | PROTEIN TRANSPORT | 06/21/12 | Crystal Structure of OccD1 (OprD) Y282R/D307H | Pseudomonas aeruginosa | 2.4 | X-RAY DIFFRACTION | 97.1 |
2ODJ | MEMBRANE PROTEIN | 12/22/06 | Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa | Pseudomonas aeruginosa | 2.9 | X-RAY DIFFRACTION | 97.8 |
3SY7 | MEMBRANE PROTEIN | 07/15/11 | Improved crystal structure of Pseudomonas aeruginosa OprD | Pseudomonas aeruginosa | 2.15 | X-RAY DIFFRACTION | 97.6 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
(Hydroxyethyloxy)Tri(Ethyloxy)Octane | DB04233 | DrugBank | 5.1.4 | P32722 | Porin D | 98.0 | 443 | 1.8e-253 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 16 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000187 (1579 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA14_51880
Search term: oprD
|