Pseudomonas aeruginosa UCBPP-PA14, PA14_54980 (ybtQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_54980
Name
ybtQ
Replicon chromosome
Genomic location 4882923 - 4884677 (- strand)
Transposon Mutants 2 transposon mutants in UCBPP-PA14

Cross-References

RefSeq YP_792571.1
GI 116048629
Entrez 4384896
INSDC ABJ09865.1
NCBI Locus Tag PA14_54980
UniParc UPI0000E44BAF
UniProtKB Acc Q02HL5
UniProtKB ID Q02HL5_PSEAB
UniRef100 UniRef100_Q02HL5
UniRef50 UniRef50_Q8RT51
UniRef90 UniRef90_Q8RT51

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC-type transporter protein ybtQ
Product Name Confidence: Class 2
Synonyms poossible ABC-type transporter protein
Evidence for Translation
Charge (pH 7) 5.23
Kyte-Doolittle Hydrophobicity Value 0.334
Molecular Weight (kDa) 62.9
Isoelectric Point (pI) 8.23

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Virulence Evidence

Source 1
Database PseudoCAP
Category Not available / Not known
Evidence ECO:0000315
mutant phenotype evidence used in manual assertion
Host Organism Mus musculus
Notes
Infection model Burned mouse model
Reference 11807055
Source 2
Database PseudoCAP
Category Not available / Not known
Evidence ECO:0000315
mutant phenotype evidence used in manual assertion
Host Organism Galleria mellonella
Notes
Infection model Galleria mellonella killing assay
Reference 11807055

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG014968 (16 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_54980
Search term: ybtQ

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48]
E-value: 1.0e-35
Percent Identity: 36.3

References

Identification of virulence genes in a pathogenic strain of Pseudomonas aeruginosa by representational difference analysis.
Choi JY, Sifri CD, Goumnerov BC, Rahme LG, Ausubel FM, Calderwood SB
J Bacteriol 2002 Feb;184(4):952-61
PubMed ID: 11807055