Pseudomonas syringae pv. tomato DC3000, PSPTO_4173 (aatM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4173
NCBI Old Locus TagPSPTO4173
Name
aatM
Synonym: PSPTO4173
Replicon chromosome
Genomic location 4701380 - 4702045 (+ strand)

Cross-References

RefSeq NP_793934.1
GI 28871315
Entrez 1185853
INSDC AAO57629.1
NCBI Locus Tag PSPTO_4173
NCBI Old Locus Tag PSPTO4173
UniParc UPI0000009204
UniProtKB Acc Q87XK5
UniProtKB ID Q87XK5_PSESM
UniRef100 UniRef100_Q87XK5
UniRef50 UniRef50_G8Q7W7
UniRef90 UniRef90_Q87XK5

Product

Feature Type CDS
Coding Frame 1
Product Name
amino acid ABC transporter permease
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 6.92
Kyte-Doolittle Hydrophobicity Value 0.847
Molecular Weight (kDa) 24.2
Isoelectric Point (pI) 10.03

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 447 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001275 (1254 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4173
Search term: aatM

Human Homologs

References

Characterization of a Pseudomonas putida ABC transporter (AatJMQP) required for acidic amino acid uptake: biochemical properties and regulation by the Aau two-component system.
Singh B, Röhm KH
Microbiology (Reading) 2008 Mar;154(Pt 3):797-809
PubMed ID: 18310026