Pseudomonas protegens Pf-5, PFL_3118 (fapA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3118
Name
fapA
Replicon chromosome
Genomic location 3589219 - 3589665 (+ strand)

Cross-References

RefSeq YP_260224.2
GI 346642980
Entrez 3477289
INSDC AAY92388.2
NCBI Locus Tag PFL_3118
UniParc UPI000219FFD8
UniProtKB Acc Q4KC09
UniProtKB ID Q4KC09_PSEF5
UniRef100 UniRef100_Q4KC09
UniRef50 UniRef50_Q4KC09
UniRef90 UniRef90_Q4KC09

Product

Feature Type CDS
Coding Frame 1
Product Name
FapA
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 2.19
Kyte-Doolittle Hydrophobicity Value 0.098
Molecular Weight (kDa) 14832.8
Isoelectric Point (pI) 9.37

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG020397 (40 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3118
Search term: fapA
Search term: FapA

Human Homologs

References

Functional amyloid in Pseudomonas.
Dueholm MS, Petersen SV, Sønderkær M, Larsen P, Christiansen G, Hein KL, Enghild JJ, Nielsen JL, Nielsen KL, Nielsen PH, Otzen DE
Mol Microbiol 2010 Aug;77(4):1009-20
PubMed ID: 20572935